6YX8: The structure of allophycocyanin from cyanobacterium Nostoc sp. WR13, the C2221 crystal form

PDB ID: 6YX8Download
MMDB ID: 201833
PDB Deposition Date: 2020/4/30
Updated in MMDB: 2021/05
Experimental Method:
x-ray diffraction
Resolution: 1.831  Å
Source Organism:
Similar Structures:
Biological Unit for 6YX8: hexameric; determined by author and by software (PISA)
Molecular Components in 6YX8
Label Count Molecule
Proteins (6 molecules)
3
Alpha Subunit of Cyanobacterial Allophycocyanin Protein
Molecule annotation
3
Beta Subunit of Cyanobacterial Allophycocyanin Protein
Molecule annotation
Chemicals and Non-standard biopolymers (99 molecules)
1
6
3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(~{Z})-(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(~{Z})-(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid
2
12
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
3
2
BICINEBICINE
4
5
PENTAETHYLENE GLYCOLPENTAETHYLENE GLYCOL
5
11
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
6
23
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
7
34
1,2-ETHANEDIOL1,2-ETHANEDIOL
8
5
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
9
1
(4R)-2-METHYLPENTANE-2,4-DIOL(4R)-2-METHYLPENTANE-2,4-DIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303