National Center for
Biotechnology Information

6YS3: Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

PDB ID:

MMDB ID:

193485

PDB Deposition Date:

2020

Updated in MMDB:

2022/11

Experimental Method:

electron microscopy

Resolution:

2.58 Å

Source Organism:

Escherichia coli BL21(DE3)▼

Taxonomy	Molecule
Escherichia coli BL21(DE3)	0, 1, 2, 3, 4, 6, 7, 8, a, b, c, d, e, f, g, h, j, k, l, m, n, o, p, q, r, s, t, u, v, w, y
Bos taurus	z

Similar Structures:

Molecular Components in 6YS3
Label	Count	Molecule
Proteins (29 molecules)
0	1	50S Ribosomal Protein L28
1	1	50S Ribosomal Protein L29
2	1	50S Ribosomal Protein L30
3	1	50S Ribosomal Protein L32
4	1	50S Ribosomal Protein L33
6	1	50S Ribosomal Protein L34
7	1	50S Ribosomal Protein L35
8	1	50S Ribosomal Protein L36
c	1	50S Ribosomal Protein L2
d	1	50S Ribosomal Protein L3
e	1	50S Ribosomal Protein L4
f	1	50S Ribosomal Protein L5
g	1	50S Ribosomal Protein L6
h	1	50S Ribosomal Protein L9
j	1	50S Ribosomal Protein L13
k	1	50S Ribosomal Protein L14
l	1	50S Ribosomal Protein L15
m	1	50S Ribosomal Protein L16
n	1	50S Ribosomal Protein L17
o	1	50S Ribosomal Protein L18
p	1	50S Ribosomal Protein L19
q	1	50S Ribosomal Protein L20
r	1	50S Ribosomal Protein L21
s	1	50S Ribosomal Protein L22
t	1	50S Ribosomal Protein L23
u	1	50S Ribosomal Protein L24
w	1	50S Ribosomal Protein L25
y	1	50S Ribosomal Protein L27
z	1	Gamma-crystallin B
Nucleotides(3 molecules)
a	1	5S rRNA
b	1	23S rRNA
v	1	Glycine-trna Glyt

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303