6YRD: SFX structure of dye-type peroxidase DtpB in the ferryl state

PDB ID: 6YRDDownload
MMDB ID: 197459
PDB Deposition Date: 2020/4/20
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 1.75  Å
Source Organism:
Similar Structures:
Biological Unit for 6YRD: monomeric; determined by author
Molecular Components in 6YRD
Label Count Molecule
Protein (1 molecule)
1
Putative Iron-dependent Peroxidase
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
2
1
MAGNESIUM IONMAGNESIUM ION
3
1
OXYGEN ATOMOXYGEN ATOM
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303