6YR4: Dye-type peroxidase DtpB in the ferryl state: Spectroscopically Validated composite structure

PDB ID: 6YR4Download
MMDB ID: 197457
PDB Deposition Date: 2020/4/19
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 1.85  Å
Source Organism:
Similar Structures:
Biological Unit for 6YR4: hexameric; determined by software (PISA)
Molecular Components in 6YR4
Label Count Molecule
Proteins (6 molecules)
6
Putative Iron-dependent Peroxidase
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
6
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
2
2
MAGNESIUM IONMAGNESIUM ION
3
6
OXYGEN ATOMOXYGEN ATOM
4
1
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303