6YNX: Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - Fo-subcomplex

PDB ID: 6YNXDownload
MMDB ID: 193824
PDB Deposition Date: 2020/4/14
Updated in MMDB: 2025/12
Experimental Method:
electron microscopy
Resolution: 2.5  Å
Source Organism:
Similar Structures:
Biological Unit for 6YNX: 41-meric; determined by author
Molecular Components in 6YNX
Label Count Molecule
Proteins (41 molecules)
2
Subunit a
Molecule annotation
2
Subunit B
Molecule annotation
2
Subunit D
Molecule annotation
2
Subunit F
Molecule annotation
2
Subunit I/J
Molecule annotation
2
Subunit K
Molecule annotation
2
Subunit 8
Molecule annotation
2
Atptt3
Molecule annotation
2
Atptt4
Molecule annotation
2
Atptt5
Molecule annotation
2
Atptt6
Molecule annotation
2
Atptt7
Molecule annotation
2
Atptt8
Molecule annotation
2
Atptt9
Molecule annotation
2
Atptt10
Molecule annotation
2
Atptt11
Molecule annotation
2
Atptt12
Molecule annotation
2
Atptt13
Molecule annotation
2
Atptt1
Molecule annotation
2
Inhibitor of F1 (If1)
Molecule annotation
1
Atptt2
Molecule annotation
Chemicals and Non-standard biopolymers (50 molecules)
1
30
CARDIOLIPINCARDIOLIPIN
2
6
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
3
2
PHOSPHATE IONPHOSPHATE ION
4
2
Ubiquinone-8Ubiquinone-8
5
2
ADENOSINE-5'-TRIPHOSPHATEADENOSINE-5'-TRIPHOSPHATE
6
2
MAGNESIUM IONMAGNESIUM ION
7
4
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine1,2-dioleoyl-sn-glycero-3-phosphoethanolamine
8
2
NICOTINAMIDE-ADENINE-DINUCLEOTIDENICOTINAMIDE-ADENINE-DINUCLEOTIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303