6YMY: Cytochrome c oxidase from Saccharomyces cerevisiae

PDB ID: 6YMYDownload
MMDB ID: 192204
PDB Deposition Date: 2020/4/10
Updated in MMDB: 2022/11
Experimental Method:
electron microscopy
Resolution: 3.41  Å
Source Organism:
Similar Structures:
Biological Unit for 6YMY: dodecameric; determined by author and by software (PISA)
Molecular Components in 6YMY
Label Count Molecule
Proteins (12 molecules)
1
Cytochrome C Oxidase Subunit 1
(Gene symbol: COX1)
Molecule annotation
1
Cytochrome C Oxidase Subunit 2
(Gene symbol: COX2)
Molecule annotation
1
Cytochrome C Oxidase Subunit 3
(Gene symbol: COX3)
Molecule annotation
1
Cytochrome C Oxidase Subunit 4, Mitochondrial
(Gene symbol: COX4)
Molecule annotation
1
Cytochrome C Oxidase Subunit 5A, Mitochondrial
(Gene symbol: COX5A)
Molecule annotation
1
Cytochrome C Oxidase Subunit 6, Mitochondrial
(Gene symbol: COX6)
Molecule annotation
1
Cytochrome C Oxidase Subunit 7, Mitochondrial
(Gene symbol: COX7)
Molecule annotation
1
Cytochrome C Oxidase Subunit 8, Mitochondrial
(Gene symbol: COX8)
Molecule annotation
1
Cytochrome C Oxidase Subunit 9, Mitochondrial
(Gene symbol: COX9)
Molecule annotation
1
Cytochrome C Oxidase Subunit 12, Mitochondrial
(Gene symbol: COX12)
Molecule annotation
1
Cytochrome C Oxidase Subunit 13, Mitochondrial
(Gene symbol: COX13)
Molecule annotation
1
Cytochrome C Oxidase Subunit 26, Mitochondrial
(Gene symbol: COX26)
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
1
COPPER (II) IONCOPPER (II) ION
2
2
HEME-AHEME-A
3
7
PHOSPHATIDYLETHANOLAMINEPHOSPHATIDYLETHANOLAMINE
4
1
(2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate(2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate
5
1
DINUCLEAR COPPER IONDINUCLEAR COPPER ION
6
3
1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
7
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303