6YMW: Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex

PDB ID: 6YMWDownload
MMDB ID: 196162
PDB Deposition Date: 2020/4/10
Updated in MMDB: 2023/10
Experimental Method:
electron microscopy
Resolution: 3.71  Å
Source Organism:
Saccharomyces cerevisiae S288C▼
Similar Structures:
Biological Unit for 6YMW: pentameric; determined by author and by software (PISA)
Molecular Components in 6YMW
Label Count Molecule
Proteins (2 molecules)
1
Mitochondrial Transcription Factor 1
Molecule annotation
1
DNA-directed RNA Polymerase, Mitochondrial
Molecule annotation
Nucleotides(3 molecules)
1
Chains: N
Molecule annotation
1
Chains: T
Molecule annotation
1
RNA (Pppgpg)
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
1
[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl] phosphono hydrogen phosphate[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl] phosphono hydrogen phosphate
2
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303