6YMP: Thrombin in complex with 3-((5-(tert-butyl)isoxazol-3-yl)methyl)oxetan-3-amine (j54)

PDB ID: 6YMPDownload
MMDB ID: 201117
PDB Deposition Date: 2020/4/9
Updated in MMDB: 2021/10
Experimental Method:
x-ray diffraction
Resolution: 1.42  Å
Source Organism:
Homo sapiens▼
Similar Structures:
Biological Unit for 6YMP: trimeric; determined by author and by software (PISA)
Molecular Components in 6YMP
Label Count Molecule
Proteins (3 molecules)
1
Prothrombin
Molecule annotation
1
Prothrombin
Molecule annotation
1
Hirudin Variant-2
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
2
SODIUM IONSODIUM ION
2
1
PHOSPHATE IONPHOSPHATE ION
3
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
4
2
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
5
1
3-[(5-tert-butyl-1,2-oxazol-3-yl)methyl]oxetan-3-amine3-[(5-tert-butyl-1,2-oxazol-3-yl)methyl]oxetan-3-amine
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303