6YMG: VcaM4I restriction endonuclease in complex with 5mC-modified dsDNA

PDB ID: 6YMGDownload
MMDB ID: 196779
PDB Deposition Date: 2020/4/8
Updated in MMDB: 2021/03
Experimental Method:
x-ray diffraction
Resolution: 3.14  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6YMG: hexameric; determined by author and by software (PISA)
Molecular Components in 6YMG
Label Count Molecule
Proteins (2 molecules)
2
HNH Endonuclease
Molecule annotation
Nucleotides(4 molecules)
2
DNA (5'-d(*cp*cp*ap*tp*gp*(5cm)p*gp*cp*tp*gp*a)-3')
Molecule annotation
2
DNA (5'-d(p*cp*ap*gp*cp*gp*cp*ap*tp*gp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
1
CHLORIDE IONCHLORIDE ION
2
9
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303