6YMD: Crystal structure of serine hydroxymethyltransferase from Aphanothece halophytica in the covalent complex with malonate

PDB ID: 6YMDDownload
MMDB ID: 188527
PDB Deposition Date: 2020/4/8
Updated in MMDB: 2020/06
Experimental Method:
x-ray diffraction
Resolution: 1.25  Å
Source Organism:
Similar Structures:
Biological Unit for 6YMD: dimeric; determined by author and by software (PISA)
Molecular Components in 6YMD
Label Count Molecule
Proteins (2 molecules)
2
Serine Hydroxymethyltransferase
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
1
2
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
2
5
1,2-ETHANEDIOL1,2-ETHANEDIOL
3
2
MALONATE IONMALONATE ION
4
2
SODIUM IONSODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303