6YM3: Crystal structure of Compound 1 with PIP4K2A

PDB ID: 6YM3Download
MMDB ID: 200877
PDB Deposition Date: 2020/4/7
Updated in MMDB: 2021/12
Experimental Method:
x-ray diffraction
Resolution: 2.05  Å
Source Organism:
Similar Structures:
Biological Unit for 6YM3: dimeric; determined by author and by software (PISA)
Molecular Components in 6YM3
Label Count Molecule
Proteins (2 molecules)
2
Phosphatidylinositol 5-phosphate 4-kinase Type-2 Alpha
(Gene symbol: PIP4K2A)
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
(2~{R})-2-[[3-cyano-2-[4-(2-ethoxyphenyl)phenyl]-5,8-dihydro-1,7-naphthyridin-4-yl]amino]propanoic acid(2~{R})-2-[[3-cyano-2-[4-(2-ethoxyphenyl)phenyl]-5,8-dihydro-1,7-naphthyridin-4-yl]amino]propanoic acid
2
2
PHOSPHATE IONPHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303