6YKN: Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with Compound 11b

PDB ID: 6YKNDownload
MMDB ID: 195867
PDB Deposition Date: 2020/4/6
Updated in MMDB: 2024/01
Experimental Method:
x-ray diffraction
Resolution: 2.63  Å
Source Organism:
Similar Structures:
Biological Unit for 6YKN: monomeric; determined by author and by software (PISA)
Molecular Components in 6YKN
Label Count Molecule
Protein (1 molecule)
1
Leucine--trna Ligase
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
3
1,2-ETHANEDIOL1,2-ETHANEDIOL
2
1
[(2~{R},3~{S},4~{S},5~{R})-5-[3-[4-(aminomethyl)-1,2,3-triazol-1-yl]propyl]-3,4-bis(oxidanyl)oxan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-4-methyl-pentanoyl]sulfamate[(2~{R},3~{S},4~{S},5~{R})-5-[3-[4-(aminomethyl)-1,2,3-triazol-1-yl]propyl]-3,4-bis(oxidanyl)oxan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-4-methyl-pentanoyl]sulfamate
3
1
MAGNESIUM IONMAGNESIUM ION
4
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303