6YKF: VcaM4I restriction endonuclease in the presence of 5mC-modified ssDNA

PDB ID: 6YKFDownload
MMDB ID: 196778
PDB Deposition Date: 2020/4/6
Updated in MMDB: 2021/03
Experimental Method:
x-ray diffraction
Resolution: 1.48  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6YKF: dimeric; determined by author and by software (PISA)
Molecular Components in 6YKF
Label Count Molecule
Protein (1 molecule)
1
HNH Endonuclease
Molecule annotation
Nucleotide(1 molecule)
1
DNA (5'-d(*cp*ap*(5cm)p*ap*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (22 molecules)
1
11
SULFATE IONSULFATE ION
2
10
GLYCEROLGLYCEROL
3
1
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303