6YJ4: Structure of Yarrowia lipolytica complex I at 2.7 A

PDB ID: 6YJ4Download
MMDB ID: 191229
PDB Deposition Date: 2020/4/2
Updated in MMDB: 2025/12
Experimental Method:
electron microscopy
Resolution: 2.7  Å
Source Organism:
Yarrowia lipolytica CLIB122
Similar Structures:
Biological Unit for 6YJ4: 42-meric; determined by author
Molecular Components in 6YJ4
Label Count Molecule
Proteins (42 molecules)
1
Nadh-ubiquinone Oxidoreductase Chain 3
Molecule annotation
1
Subunit Nukm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Nugm Protein
Molecule annotation
1
Nucm Protein
Molecule annotation
1
Subunit Nuhm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nubm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nuam of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 1
Molecule annotation
1
Subunit Nuim of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 6
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 4L
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 5
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 4
Molecule annotation
1
Nadh Dehydrogenase Subunit 2
Molecule annotation
1
Subunit Nuxm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nuem of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nuym of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Numm of Protein Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Ni8m of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Acyl Carrier Protein Acpm1 of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Acyl Carrier Protein Acpm2 of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nufm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nb4m of Protein Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nupm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nujm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nb6m of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nimm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Ni9m of Protein Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nuzm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nebm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nipm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit N7bm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nesm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nunm of Protein Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nuum of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nigm of Protein Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nb2m of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Niam of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nb5m of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Ni2m of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nb8m of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
1
Subunit Nidm of Nadh:ubiquinone Oxidoreductase (Complex I)
Molecule annotation
Chemicals and Non-standard biopolymers (50 molecules)
18
1,2-Distearoyl-sn-glycerophosphoethanolamine (Link to PubChem not yet available)1,2-Distearoyl-sn-glycerophosphoethanolamine
6
IRON/SULFUR CLUSTER (Link to PubChem not yet available)IRON/SULFUR CLUSTER
5
DODECYL-BETA-D-MALTOSIDE (Link to PubChem not yet available)DODECYL-BETA-D-MALTOSIDE
8
DIUNDECYL PHOSPHATIDYL CHOLINE (Link to PubChem not yet available)DIUNDECYL PHOSPHATIDYL CHOLINE
2
FE2/S2 (INORGANIC) CLUSTER (Link to PubChem not yet available)FE2/S2 (INORGANIC) CLUSTER
1
FLAVIN MONONUCLEOTIDE (Link to PubChem not yet available)FLAVIN MONONUCLEOTIDE
6
CARDIOLIPIN (Link to PubChem not yet available)CARDIOLIPIN
1
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE (Link to PubChem not yet available)NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
1
ZINC ION (Link to PubChem not yet available)ZINC ION
2
~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate (Link to PubChem not yet available)~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate
* Click molecule labels to explore molecular sequence information.

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