6YHJ: Thrombin in complex with D-Phe-Pro-2-chlorothiophen derivative (16e)

PDB ID: 6YHJDownload
MMDB ID: 200847
PDB Deposition Date: 2020/3/30
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.44  Å
Source Organism:
Homo sapiens▼
Similar Structures:
Biological Unit for 6YHJ: trimeric; determined by author and by software (PISA)
Molecular Components in 6YHJ
Label Count Molecule
Proteins (3 molecules)
1
Prothrombin
Molecule annotation
1
Prothrombin
Molecule annotation
1
Hirudin Variant-2
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
2
2
SODIUM IONSODIUM ION
3
1
PHOSPHATE IONPHOSPHATE ION
4
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
5
2
(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(5-chloranylthiophen-2-yl)methyl]pyrrolidine-2-carboxamide(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(5-chloranylthiophen-2-yl)methyl]pyrrolidine-2-carboxamide
6
1
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303