6YGG: NADase from Aspergillus fumigatus complexed with a substrate anologue

PDB ID: 6YGGDownload
MMDB ID: 196775
PDB Deposition Date: 2020/3/27
Updated in MMDB: 2021/07
Experimental Method:
x-ray diffraction
Resolution: 1.85  Å
Source Organism:
Similar Structures:
Biological Unit for 6YGG: dimeric; determined by author and by software (PISA)
Molecular Components in 6YGG
Label Count Molecule
Proteins (2 molecules)
2
Afnadase
(Gene symbol: AFUA_6G14470)
Molecule annotation
Chemicals and Non-standard biopolymers (19 molecules)
1
10
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
5
alpha-L-fucopyranosealpha-L-fucopyranose
3
2
CALCIUM IONCALCIUM ION
4
1
SODIUM IONSODIUM ION
5
1
[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4R,5S)-5-(3-carbamoylphenyl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4R,5S)-5-(3-carbamoylphenyl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303