6YGF: NADase from Aspergillus fumigatus with trapped reaction products

PDB ID: 6YGFDownload
MMDB ID: 196774
PDB Deposition Date: 2020/3/27
Updated in MMDB: 2021/07
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Source Organism:
Similar Structures:
Biological Unit for 6YGF: dimeric; determined by author and by software (PISA)
Molecular Components in 6YGF
Label Count Molecule
Proteins (2 molecules)
2
Afnadase
(Gene symbol: AFUA_6G14470)
Molecule annotation
Chemicals and Non-standard biopolymers (23 molecules)
1
8
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
4
alpha-L-fucopyranosealpha-L-fucopyranose
3
1
beta-D-mannopyranosebeta-D-mannopyranose
4
2
alpha-D-mannopyranosealpha-D-mannopyranose
5
3
GLYCEROLGLYCEROL
6
3
PHOSPHATE IONPHOSPHATE ION
7
1
NICOTINAMIDENICOTINAMIDE
8
1
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303