6Y5Y: Structure of New Jersey Polyomavirus VP1 in complex with 3'-Sialyllactose

PDB ID: 6Y5YDownload
MMDB ID: 190475
PDB Deposition Date: 2020/2/26
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.8  Å
Source Organism:
Similar Structures:
Biological Unit for 6Y5Y: pentameric; determined by author and by software (PISA)
Molecular Components in 6Y5Y
Label Count Molecule
Proteins (5 molecules)
5
VP1
(Gene symbol: VP1)
Molecule annotation
Chemicals and Non-standard biopolymers (53 molecules)
1
9
beta-D-galactopyranosebeta-D-galactopyranose
2
10
N-acetyl-alpha-neuraminic acidN-acetyl-alpha-neuraminic acid
3
5
beta-D-glucopyranosebeta-D-glucopyranose
4
3
alpha-D-glucopyranosealpha-D-glucopyranose
5
21
GLYCEROLGLYCEROL
6
5
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303