6Y54: Crystal structure of a Neisseria meningitidis serogroup A capsular oligosaccharide bound to a functional Fab

PDB ID: 6Y54Download
MMDB ID: 193717
PDB Deposition Date: 2020/2/24
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 2.67  Å
Source Organism:
Similar Structures:
Biological Unit for 6Y54: dimeric; determined by author
Molecular Components in 6Y54
Label Count Molecule
Proteins (2 molecules)
1
FAB A1.1 H Chain
Molecule annotation
1
FAB A1.1 L Chain
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
4
IODIDE IONIODIDE ION
2
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
3
1
{[(2R,3S,4R,5S,6R)-5-acetamido-3-hydroxy-4-(2-oxopropyl)-6-(phosphonooxy)oxan-2-yl]methoxy}phosphonic acid{[(2R,3S,4R,5S,6R)-5-acetamido-3-hydroxy-4-(2-oxopropyl)-6-(phosphonooxy)oxan-2-yl]methoxy}phosphonic acid
4
1
{[(2R,3S,4R,5S,6S)-3-(acetyloxy)-5-acetamido-4,6-dihydroxyoxan-2-yl]methoxy}phosphonic acid{[(2R,3S,4R,5S,6S)-3-(acetyloxy)-5-acetamido-4,6-dihydroxyoxan-2-yl]methoxy}phosphonic acid
5
1
{[(2R,3S,4R,5S,6S)-5-acetamido-3,6-dihydroxy-4-(2-oxopropyl)oxan-2-yl]methoxy}phosphonic acid{[(2R,3S,4R,5S,6S)-5-acetamido-3,6-dihydroxy-4-(2-oxopropyl)oxan-2-yl]methoxy}phosphonic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303