6Y4M: Structure of Tubulin Tyrosine Ligase in Complex with Tb111

PDB ID: 6Y4MDownload
MMDB ID: 200305
PDB Deposition Date: 2020/2/21
Updated in MMDB: 2022/11
Experimental Method:
x-ray diffraction
Resolution: 3.34  Å
Source Organism:
Rattus norvegicus▼
Similar Structures:
Biological Unit for 6Y4M: hexameric; determined by author and by software (PISA)
Molecular Components in 6Y4M
Label Count Molecule
Proteins (6 molecules)
2
Tubulin Alpha-1b Chain
Molecule annotation
2
Tubulin Beta Chain
Molecule annotation
1
Stathmin-4
Molecule annotation
1
Tubulin-tyrosine Ligase
Molecule annotation
Chemicals and Non-standard biopolymers (17 molecules)
1
3
GUANOSINE-5'-TRIPHOSPHATEGUANOSINE-5'-TRIPHOSPHATE
2
4
MAGNESIUM IONMAGNESIUM ION
3
2
CALCIUM IONCALCIUM ION
4
1
GUANOSINE-5'-DIPHOSPHATEGUANOSINE-5'-DIPHOSPHATE
5
1
2-(N-MORPHOLINO)-ETHANESULFONIC ACID2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6
1
(2~{R})-1-methylpiperidine-2-carboxylic acid(2~{R})-1-methylpiperidine-2-carboxylic acid
7
1
[(1~{R},3~{R})-1-acetyloxy-1-[4-methanoyl-5-(2-phenylmethoxyethyl)-2,3-dihydro-1,3-thiazol-2-yl]-4-methyl-pentan-3-yl]-methyl-azanium[(1~{R},3~{R})-1-acetyloxy-1-[4-methanoyl-5-(2-phenylmethoxyethyl)-2,3-dihydro-1,3-thiazol-2-yl]-4-methyl-pentan-3-yl]-methyl-azanium
8
1
(2~{S},4~{R})-4-azanyl-2-methyl-5-phenyl-pentanoic acid(2~{S},4~{R})-4-azanyl-2-methyl-5-phenyl-pentanoic acid
9
1
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
10
1
VALINEVALINE
11
1
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTERPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303