6XX4: Crystal structure of the c-Src SH3 domain H122R-Q128E mutant in complex with Ni(II) at pH 7.5 co-crystallized with methyl beta-cyclodextrin

PDB ID: 6XX4Download
MMDB ID: 186861
PDB Deposition Date: 2020/1/26
Updated in MMDB: 2020/06
Experimental Method:
x-ray diffraction
Resolution: 1.05  Å
Source Organism:
Similar Structures:
Biological Unit for 6XX4: monomeric; determined by author and by software (PISA)
Molecular Components in 6XX4
Label Count Molecule
Protein (1 molecule)
1
Proto-oncogene Tyrosine-protein Kinase SRC
(Gene symbol: SRC)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
3-O-methyl-alpha-D-glucopyranose3-O-methyl-alpha-D-glucopyranose
2
2
alpha-D-glucopyranosealpha-D-glucopyranose
3
2
2-O-methyl-alpha-D-glucopyranose2-O-methyl-alpha-D-glucopyranose
4
1
2,6-di-O-methyl-alpha-D-glucopyranose2,6-di-O-methyl-alpha-D-glucopyranose
5
1
2,3-di-O-methyl-alpha-D-glucopyranose2,3-di-O-methyl-alpha-D-glucopyranose
6
1
NICKEL (II) IONNICKEL (II) ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303