6XRE: Structure of the p53/RNA polymerase II assembly

PDB ID: 6XREDownload
MMDB ID: 200061
PDB Deposition Date: 2020/7/12
Updated in MMDB: 2024/03
Experimental Method:
electron microscopy
Resolution: 4.6  Å
Source Organism:
Similar Structures:
Biological Unit for 6XRE: tridecameric; determined by author
Molecular Components in 6XRE
Label Count Molecule
Proteins (13 molecules)
1
DNA-directed RNA Polymerase II Subunit Rpb1
(Gene symbol: POLR2A)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb2
(Gene symbol: POLR2B)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb3
(Gene symbol: POLR2C)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb4
(Gene symbol: POLR2D)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb5
(Gene symbol: POLR2E)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
(Gene symbol: POLR2F)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb7
(Gene symbol: POLR2G)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
(Gene symbol: POLR2H)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb9
(Gene symbol: POLR2I)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
(Gene symbol: POLR2L)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb11-a
(Gene symbol: POLR2J)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
(Gene symbol: POLR2K)
Molecule annotation
1
Cellular Tumor Antigen P53
(Gene symbol: TP53)
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
8
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303