6XM9: Crystal structure of vanillin bound to Co-LSD4 from Sphingobium sp. strain SYK-6

PDB ID: 6XM9Download
MMDB ID: 201800
PDB Deposition Date: 2020/6/29
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.651  Å
Source Organism:
Similar Structures:
Biological Unit for 6XM9: dimeric; determined by author
Molecular Components in 6XM9
Label Count Molecule
Proteins (2 molecules)
2
Dioxygenase
Molecule annotation
Chemicals and Non-standard biopolymers (26 molecules)
1
2
4-hydroxy-3-methoxybenzaldehyde4-hydroxy-3-methoxybenzaldehyde
2
16
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
3
2
ACETATE IONACETATE ION
4
4
COBALT (II) IONCOBALT (II) ION
5
2
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303