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Biotechnology Information

6XIQ: Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

PDB ID:	6XIQ Download
MMDB ID:	192893
PDB Deposition Date:	2020/6/21
Updated in MMDB:	2024/10
Experimental Method:	electron microscopy
Resolution:	4.2 Å
Source Organism:	Saccharomyces cerevisiae
Similar Structures:

Biological Unit for 6XIQ: 82-meric; determined by author

Molecular Components in 6XIQ
Label	Count	Molecule
Proteins (75 molecules)
A	1	60S Ribosomal Protein L2-a
B	1	Rpl3 Isoform 1
C	1	Rpl4a Isoform 1
D	1	Rpl5 Isoform 1
E	1	60S Ribosomal Protein L6-a
F	1	60S Ribosomal Protein L7-a
G	1	Rpl8a Isoform 1
H	1	Rpl9a Isoform 1
I	1	Rpl10 Isoform 1
J	1	Rpl11b Isoform 1
L	1	60S Ribosomal Protein L13-a
M	1	60S Ribosomal Protein L14-a
N	1	60S Ribosomal Protein L15-a
O	1	60S Ribosomal Protein L16-a
P	1	60S Ribosomal Protein L17-a
Q	1	60S Ribosomal Protein L18-a
R	1	60S Ribosomal Protein L19-a
S	1	60S Ribosomal Protein L20-a
T	1	60S Ribosomal Protein L21-a
U	1	60S Ribosomal Protein L22-a
V	1	60S Ribosomal Protein L23-a
W	1	Rpl24a Isoform 1
X	1	60S Ribosomal Protein L25
Y	1	60S Ribosomal Protein L26-a
Z	1	60S Ribosomal Protein L27-a
AA	1	40S Ribosomal Protein S10-a
AB	1	40S Ribosomal Protein S11-a
P0	1	Rpp0 Isoform 1
P2	1	Rpl12a Isoform 1
a	1	60S Ribosomal Protein L28
b	1	Rpl29 Isoform 1
c	1	60S Ribosomal Protein L30
d	1	60S Ribosomal Protein L31-a
e	1	Rpl32 Isoform 1
f	1	60S Ribosomal Protein L33-a
g	1	60S Ribosomal Protein L34-a
h	1	60S Ribosomal Protein L35-a
i	1	60S Ribosomal Protein L36-a
j	1	60S Ribosomal Protein L37-a
k	1	Rpl38 Isoform 1
l	1	60S Ribosomal Protein L39
m	1	60S Ribosomal Protein L40
n	1	Rpl41a Isoform 1
o	1	60S Ribosomal Protein L42-a
p	1	60S Ribosomal Protein L43-a
q	1	40S Ribosomal Protein S0-a
r	1	Rps1a Isoform 1
s	1	Rps2 Isoform 1
t	1	Rps3 Isoform 1
u	1	40S Ribosomal Protein S4-a
v	1	Rps5p
w	1	40S Ribosomal Protein S6-a
x	1	40S Ribosomal Protein S7-a
y	1	Rps8a Isoform 1
z	1	40S Ribosomal Protein S9-a
AD	1	40S Ribosomal Protein S13
AE	1	40S Ribosomal Protein S14-b
AF	1	Rps15 Isoform 1
AG	1	40S Ribosomal Protein S16-a
AH	1	40S Ribosomal Protein S17-b
AI	1	40S Ribosomal Protein S18-a
AJ	1	40S Ribosomal Protein S19-a
AK	1	Rps20 Isoform 1
AL	1	40S Ribosomal Protein S21-a
AM	1	Rps22a Isoform 1
AN	1	40S Ribosomal Protein S23-a
AO	1	40S Ribosomal Protein S24-a
AP	1	Rps25a Isoform 1
AQ	1	Rps26b Isoform 1
AR	1	40S Ribosomal Protein S27-a
AS	1	Rps28a Isoform 1
AT	1	Rps29a Isoform 1
AU	1	40S Ribosomal Protein S30-a
AV	1	Guanine Nucleotide-binding Protein Subunit Beta-like Protein
L1	1	Rpl1a Isoform 1
Nucleotides(7 molecules)
1	1	35S Ribosomal RNA
3	1	5S Ribosomal RNA
4	1	5.8s Ribosomal RNA
2	1	18S Ribosomal RNA
AX AZ	2	Transfer RNA
AY	1	mRNA
Chemicals and Non-standard biopolymers (7 molecules)
1	7	ZINC ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303