6XDY: Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J7 immobile Holliday junction

PDB ID: 6XDYDownload
MMDB ID: 204288
PDB Deposition Date: 2020/6/11
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 3.06  Å
Source Organism:
Molecular Components in 6XDY
Label Count Molecule
Nucleotides(4 molecules)
1
DNA (5'-d(*gp*ap*gp*cp*ap*gp*ap*cp*cp*ap*g)-3')
Molecule annotation
1
DNA (5'-d(p*ap*cp*gp*tp*cp*ap*cp*tp*cp*a)-3')
Molecule annotation
1
DNA (5'-d(p*cp*tp*cp*gp*t)-3')
Molecule annotation
1
DNA (5'-d(*tp*cp*tp*gp*ap*gp*tp*gp*ap*gp*gp*tp*cp*tp*gp*c)-3')
Molecule annotation
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303