6XDG: Complex of SARS-CoV-2 receptor binding domain with the Fab fragments of two neutralizing antibodies

PDB ID: 6XDGDownload
MMDB ID: 189316
PDB Deposition Date: 2020/6/10
Updated in MMDB: 2020/09
Experimental Method:
electron microscopy
Resolution: 3.9  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 6XDG: pentameric; determined by author
Molecular Components in 6XDG
Label Count Molecule
Proteins (5 molecules)
1
Spike Protein S1
Molecule annotation
1
Regn10933 Antibody FAB Fragment Light Chain
Molecule annotation
1
Regn10933 Antibody FAB Fragment Heavy Chain
Molecule annotation
1
Regn10987 Antibody FAB Fragment Heavy Chain
Molecule annotation
1
Regn10987 Antibody FAB Fragment Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
3
1
alpha-D-mannopyranosealpha-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303