6XCM: Structure of the SARS-CoV-2 spike glycoprotein in complex with the C105 neutralizing antibody Fab fragment (state 1)

PDB ID: 6XCMDownload
MMDB ID: 189601
PDB Deposition Date: 2020/6/8
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 3.42  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 6XCM: heptameric; determined by author
Molecular Components in 6XCM
Label Count Molecule
Proteins (7 molecules)
3
Spike Glycoprotein
Molecule annotation
2
C105 FAB Heavy Chain
Molecule annotation
2
C105 FAB Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (59 molecules)
1
55
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
3
alpha-L-fucopyranosealpha-L-fucopyranose
3
1
beta-D-mannopyranosebeta-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303