6X8B: Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J6 immobile Holliday junction

PDB ID: 6X8BDownload
MMDB ID: 204280
PDB Deposition Date: 2020/6/1
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.899  Å
Source Organism:
Biological Unit for 6X8B: tetrameric; determined by author and by software (PISA)
Molecular Components in 6X8B
Label Count Molecule
Nucleotides(4 molecules)
1
DNA (5'-d(*gp*ap*gp*cp*ap*gp*ap*cp*ap*ap*gp*ap*cp*tp*tp*cp*ap*cp*tp*cp*a)-3')
Molecule annotation
1
DNA (5'-d(p*ap*gp*tp*cp*t)-3')
Molecule annotation
1
DNA (5'-d(*tp*cp*tp*gp*ap*gp*tp*gp*a)-3')
Molecule annotation
1
DNA (5'-d(p*tp*gp*tp*cp*tp*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
3
MAGNESIUM IONMAGNESIUM ION
2
2
CACODYLATE IONCACODYLATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303