6X89: Vigna radiata mitochondrial complex I*

PDB ID: 6X89Download
MMDB ID: 192886
PDB Deposition Date: 2020/6/1
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 3.9  Å
Source Organism:
Similar Structures:
Biological Unit for 6X89: 34-meric; determined by author
Molecular Components in 6X89
Label Count Molecule
Proteins (34 molecules)
1
Unknown Peptide
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 2
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 5, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 6
Molecule annotation
1
Ndua7
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 9, Mitochondrial Isoform X1
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 12
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 1, Mitochondrial
Molecule annotation
1
Ndus2
Molecule annotation
1
Ndus3
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 4, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 6, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 7, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 8, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Flavoprotein 1, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Flavoprotein 2, Mitochondrial
Molecule annotation
1
Nu1m
Molecule annotation
1
Nu2m
Molecule annotation
1
Nu3m
Molecule annotation
1
Nu4l
Molecule annotation
1
Nu6m
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 1
Molecule annotation
1
Uncharacterized Protein Loc106754061
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 8-B
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 13-a
Molecule annotation
1
Unknown Peptide
Molecule annotation
1
Unknown Peptide
Molecule annotation
1
Nduc2
Molecule annotation
1
Protein At2g27730, Mitochondrial
Molecule annotation
1
Serine/arginine-rich-splicing Factor Sr34 Isoform X2
Molecule annotation
1
Ndux1
Molecule annotation
1
Gamma Carbonic Anhydrase 1, Mitochondrial
Molecule annotation
1
Gamma Carbonic Anhydrase 1, Mitochondrial-like
Molecule annotation
1
Gamma Carbonic Anhydrase-like 2, Mitochondrial
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
1
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATENADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2
6
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
3
6
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
4
2
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
5
2
ZINC IONZINC ION
6
1
FLAVIN MONONUCLEOTIDEFLAVIN MONONUCLEOTIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303