6X5B: Symmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with small molecule GO52

PDB ID: 6X5BDownload
MMDB ID: 193950
PDB Deposition Date: 2020
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 3.6  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 6X5B: 15-meric; determined by author
Molecular Components in 6X5B
Label Count Molecule
Proteins (15 molecules)
3
Envelope Glycoprotein Gp120
Molecule annotation
3
Envelope Glycoprotein Gp41
Molecule annotation
3
17B FAB Light Chain
Molecule annotation
3
T-cell Surface Glycoprotein CD4
Molecule annotation
3
17B FAB Heavy Chain
Molecule annotation
Chemicals and Non-standard biopolymers (51 molecules)
1
39
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
3
beta-D-mannopyranosebeta-D-mannopyranose
3
6
alpha-D-mannopyranosealpha-D-mannopyranose
4
3
N-(4'-methyl[1,1'-biphenyl]-4-yl)-1-oxa-7-azaspiro[3.5]nonane-7-carboxamideN-(4'-methyl[1,1'-biphenyl]-4-yl)-1-oxa-7-azaspiro[3.5]nonane-7-carboxamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303