6WPS: Structure of the SARS-CoV-2 spike glycoprotein in complex with the S309 neutralizing antibody Fab fragment

PDB ID: 6WPSDownload
MMDB ID: 188055
PDB Deposition Date: 2020/4/27
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 3.1  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 6WPS: nonameric; determined by author
Molecular Components in 6WPS
Label Count Molecule
Proteins (9 molecules)
3
Spike Glycoprotein
Molecule annotation
3
S309 Neutralizing Antibody Heavy Chain
Molecule annotation
3
S309 Neutralizing Antibody Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (75 molecules)
1
63
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
3
beta-D-mannopyranosebeta-D-mannopyranose
3
6
alpha-D-mannopyranosealpha-D-mannopyranose
4
3
alpha-L-fucopyranosealpha-L-fucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303