6WOC: Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5-diphosphoinositol pentakisphosphate and Mg, presoaked with 5-IP7, Mg and Fluoride, soaking 1min in the absence of Fluoride

PDB ID: 6WOCDownload
MMDB ID: 199260
PDB Deposition Date: 2020/4/24
Updated in MMDB: 2024/03
Experimental Method:
x-ray diffraction
Resolution: 1.35  Å
Source Organism:
Similar Structures:
Biological Unit for 6WOC: monomeric; determined by author and by software (PISA)
Molecular Components in 6WOC
Label Count Molecule
Protein (1 molecule)
1
Diphosphoinositol Polyphosphate Phosphohydrolase 1
(Gene symbol: NUDT3)
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate
2
3
MAGNESIUM IONMAGNESIUM ION
3
2
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303