6WHN: Histone deacetylases complex with peptide macrocycles

PDB ID: 6WHNDownload
MMDB ID: 201082
PDB Deposition Date: 2020/4/8
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.54  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6WHN: hexameric; determined by author and by software (PISA)
Molecular Components in 6WHN
Label Count Molecule
Proteins (6 molecules)
3
Histone Deacetylase 2
Molecule annotation
3
U2m-asn-pro-lys-gln-dly-trp-gly Peptide Macrocycle
Molecule annotation
Chemicals and Non-standard biopolymers (22 molecules)
1
3
ZINC IONZINC ION
2
6
SODIUM IONSODIUM ION
3
2
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
4
5
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
5
5
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
6
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303