6WFI: Methylmalonyl-CoA epimerase in complex with 2-nitronate-propionyl-CoA

PDB ID: 6WFIDownload
MMDB ID: 189872
PDB Deposition Date: 2020/4/3
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.37  Å
Source Organism:
Similar Structures:
Biological Unit for 6WFI: dimeric; determined by author and by software (PISA)
Molecular Components in 6WFI
Label Count Molecule
Proteins (2 molecules)
2
Methylmalonyl-coa Epimerase
(Gene symbol: SCO5398)
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
2
COBALT (II) IONCOBALT (II) ION
2
4
SULFATE IONSULFATE ION
3
2
CHLORIDE IONCHLORIDE ION
4
2
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
5
2
[1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-1-oxidanylidene-propan-2-ylidene]-bis(oxidanidyl)azanium[1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-1-oxidanylidene-propan-2-ylidene]-bis(oxidanidyl)azanium
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303