6W2M: Abortive ternary complex crystal structure of DNA polymerase Beta with 8OG-dC base pair at the primer terminus and flipped out dA

PDB ID: 6W2MDownload
MMDB ID: 190418
PDB Deposition Date: 2020/3/6
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.998  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6W2M: tetrameric; determined by author and by software (PISA)
Molecular Components in 6W2M
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
Template Strand
Molecule annotation
1
Primer Strand
Molecule annotation
1
Downstream Primer Strand
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
2
SODIUM IONSODIUM ION
3
2
CHLORIDE IONCHLORIDE ION
4
1
[[[(2~{R},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]methylphosphonic acid[[[(2~{R},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]methylphosphonic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303