6W13: Human 8-oxoguanine glycosylase interrogating fully intrahelical oxoG lesion DNA

PDB ID: 6W13Download
MMDB ID: 193139
PDB Deposition Date: 2020/3/3
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.38  Å
Source Organism:
Similar Structures:
Biological Unit for 6W13: trimeric; determined by author and by software (PISA)
Molecular Components in 6W13
Label Count Molecule
Protein (1 molecule)
1
N-glycosylase/dna Lyase
(Gene symbol: OGG1)
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(p*cp*ap*(8og)p*gp*tp*cp*t)-3')
Molecule annotation
1
DNA (5'-d(p*ap*cp*cp*tp*gp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
4
MAGNESIUM IONMAGNESIUM ION
2
2
ACETATE IONACETATE ION
3
1
2-(2-ethoxyethoxy)ethanethiol2-(2-ethoxyethoxy)ethanethiol
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303