6VZ4: Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102 bound to the nucleosome in ADP Beryllium Fluoride state

PDB ID: 6VZ4Download
MMDB ID: 195816
PDB Deposition Date: 2020/2/27
Updated in MMDB: 2024/03
Experimental Method:
electron microscopy
Resolution: 3.9  Å
Source Organism:
Saccharomyces cerevisiae S288C▼
Similar Structures:
Biological Unit for 6VZ4: 14-meric; determined by author
Molecular Components in 6VZ4
Label Count Molecule
Proteins (12 molecules)
2
Histone H3
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2A
Molecule annotation
2
Histone H2B
Molecule annotation
1
Nuclear Protein Sth1/nps1
Molecule annotation
1
Actin-related Protein 7
Molecule annotation
1
Actin-like Protein Arp9
Molecule annotation
1
Regulator of TY1 Transposition Protein 102
Molecule annotation
Nucleotides(2 molecules)
1
DNA (185-mer)
Molecule annotation
1
DNA (185-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
1
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
3
1
BERYLLIUM TRIFLUORIDE IONBERYLLIUM TRIFLUORIDE ION
4
1
ADENOSINE-5'-TRIPHOSPHATEADENOSINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303