6VUA: X-ray structure of human CD38 catalytic domain with 2'-Cl-araNAD+

PDB ID: 6VUADownload
MMDB ID: 188481
PDB Deposition Date: 2020/2/14
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.5  Å
Source Organism:
Similar Structures:
Biological Unit for 6VUA: monomeric; determined by author and by software (PISA)
Molecular Components in 6VUA
Label Count Molecule
Protein (1 molecule)
1
Adp-ribosyl Cyclase/cyclic Adp-ribose Hydrolase 1
(Gene symbol: CD38)
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R})-4-chloranyl-3-oxidanyl-oxolan-2-yl]methyl hydrogen phosphate[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R})-4-chloranyl-3-oxidanyl-oxolan-2-yl]methyl hydrogen phosphate
2
1
POTASSIUM IONPOTASSIUM ION
3
1
PHOSPHATE IONPHOSPHATE ION
4
2
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
5
1
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
6
1
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303