6VTX: Crystal structure of human KLF4 zinc finger DNA binding domain in complex with NANOG DNA

PDB ID: 6VTXDownload
MMDB ID: 206029
PDB Deposition Date: 2020/2/13
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.14  Å
Source Organism:
Similar Structures:
Biological Unit for 6VTX: trimeric; determined by author and by software (PISA)
Molecular Components in 6VTX
Label Count Molecule
Protein (1 molecule)
1
Krueppel-like Factor 4
(Gene symbol: KLF4)
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*ap*gp*gp*gp*gp*gp*tp*gp*tp*gp*cp*c)-3')
Molecule annotation
1
DNA (5'-d(*gp*gp*cp*ap*cp*ap*cp*cp*cp*cp*cp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
3
ZINC IONZINC ION
2
1
SODIUM IONSODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303