6VRD: Crystal structure of RNase H/RNA/PS-ASO complex at an atomic level

PDB ID: 6VRDDownload
MMDB ID: 198519
PDB Deposition Date: 2020/2/7
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.299  Å
Source Organism:
Similar Structures:
Biological Unit for 6VRD: trimeric; determined by author
Molecular Components in 6VRD
Label Count Molecule
Protein (1 molecule)
1
Ribonuclease H1
(Gene symbol: RNASEH1)
Molecule annotation
Nucleotide(1 molecule)
1
RNA (5'-r(*up*gp*gp*cp*gp*ap*gp*up*gp*gp*gp*up*gp*ap*gp*up*gp*ap*gp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
C
1
RNA (5'-R(*(OMC)P*(N7X)P*(T39)P*(C5L)P*(A2M))-D(P*(SC)P*(PST)P*(SC)P*(AS)P*(SC)P*(SC)P*(SC)P*(AS)P*(SC)P*(PST))-R(P*(6OO)P*(RFJ)P*(6OO)P*(6OO)P*(6NW))-3')
1
3
SULFATE IONSULFATE ION
2
1
GLYCEROLGLYCEROL
3
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303