6VPX: Nanodisc of full-length HIV-1 Envelope glycoprotein clone AMC011 in complex with one PGT151 Fab and three 10E8 Fabs

PDB ID: 6VPXDownload
MMDB ID: 186819
PDB Deposition Date: 2020/2/4
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 5  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 6VPX: heptadecameric; determined by author
Molecular Components in 6VPX
Label Count Molecule
Proteins (17 molecules)
3
Envelope Glycoprotein Gp120
Molecule annotation
3
Envelope Glycoprotein Gp41
Molecule annotation
3
Antibody 10e8 FAB Heavy Chain
Molecule annotation
3
Antibody 10e8 FAB Light Chain
Molecule annotation
3
Mper Peptide
Molecule annotation
1
Antibody Pgt151 FAB Heavy Chain
Molecule annotation
1
Antibody Pgt151 FAB Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (114 molecules)
1
90
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
6
beta-D-mannopyranosebeta-D-mannopyranose
3
7
alpha-D-mannopyranosealpha-D-mannopyranose
4
6
alpha-L-fucopyranosealpha-L-fucopyranose
5
2
beta-D-galactopyranosebeta-D-galactopyranose
6
3
(2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate(2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303