6VNP: Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dT

PDB ID: 6VNPDownload
MMDB ID: 198157
PDB Deposition Date: 2020/1/29
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.42  Å
Source Organism:
Homo sapiens▼
Similar Structures:
Biological Unit for 6VNP: trimeric; determined by author and by software (PISA)
Molecular Components in 6VNP
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase IV
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(p*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*tp*tp*cp*t)-3')
Molecule annotation
1
DNA (5'-d(*tp*tp*cp*ap*t*(r5m)p*gp*ap*ap*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine
2
2
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303