6VF4: DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (30 min)

PDB ID: 6VF4Download
MMDB ID: 206020
PDB Deposition Date: 2020/1/3
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 1.75  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6VF4: tetrameric; determined by author and by software (PISA)
Molecular Components in 6VF4
Label Count Molecule
Protein (1 molecule)
1
DNA-directed Dna/rna Polymerase MU
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(*cp*gp*gp*cp*ap*tp*ap*cp*g)-3')
Molecule annotation
1
DNA (5'-d(*cp*gp*tp*ap*(8gm))-3')
Molecule annotation
1
DNA (5'-d(p*gp*cp*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
5
MANGANESE (II) IONMANGANESE (II) ION
2
1
SODIUM IONSODIUM ION
3
1
PYROPHOSPHATEPYROPHOSPHATE
4
1
2,3-DIHYDROXY-1,4-DITHIOBUTANE2,3-DIHYDROXY-1,4-DITHIOBUTANE
5
1
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
6
3
1,2-ETHANEDIOL1,2-ETHANEDIOL
7
1
8-OXO-GUANOSINE-5'-TRIPHOSPHATE8-OXO-GUANOSINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303