6VDT: Crystal Structure of Dehaloperoxidase B in Complex with cofactor Iron(III) Deuteroporphyrin IX and Substrate 4-nitrophenol

PDB ID: 6VDTDownload
MMDB ID: 196940
PDB Deposition Date: 2019/12/27
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 1.978  Å
Source Organism:
Similar Structures:
Biological Unit for 6VDT: monomeric; determined by author and by software (PISA)
Molecular Components in 6VDT
Label Count Molecule
Protein (1 molecule)
1
Dehaloperoxidase B
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
FE(III) DEUTEROPORPHYRIN IXFE(III) DEUTEROPORPHYRIN IX
2
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
3
1
P-NITROPHENOLP-NITROPHENOL
4
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
5
2
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303