6VDB: SETD2 in complex with a H3-variant super-substrate peptide

PDB ID: 6VDBDownload
MMDB ID: 183611
PDB Deposition Date: 2019/12/24
Updated in MMDB: 2025/12
Experimental Method:
x-ray diffraction
Resolution: 2.3  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6VDB: dimeric; determined by author and by software (PISA)
Molecular Components in 6VDB
Label Count Molecule
Proteins (2 molecules)
1
Histone-lysine N-methyltransferase Setd2
Molecule annotation
1
Ala-pro-arg-phe-gly-gly-val-met-arg-pro-asn-arg
Molecule annotation
Chemicals and Non-standard biopolymers (25 molecules)
1
1
S-ADENOSYL-L-HOMOCYSTEINES-ADENOSYL-L-HOMOCYSTEINE
2
20
UNKNOWN ATOM OR ION (Link to PubChem not yet available)UNKNOWN ATOM OR ION
3
3
ZINC IONZINC ION
4
1
THIOCYANATE IONTHIOCYANATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303