6VCL: Crystal structure of E.coli RppH-DapF in complex with pppGpp, Mg2+ and F-

PDB ID: 6VCLDownload
MMDB ID: 183947
PDB Deposition Date: 2019/12/21
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.06  Å
Source Organism:
Similar Structures:
Biological Unit for 6VCL: dimeric; determined by author
Molecular Components in 6VCL
Label Count Molecule
Proteins (2 molecules)
1
Diaminopimelate Epimerase
Molecule annotation
1
RNA Pyrophosphohydrolase
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
2
CHLORIDE IONCHLORIDE ION
2
4
MAGNESIUM IONMAGNESIUM ION
3
2
GLYCEROLGLYCEROL
4
1
FLUORIDE IONFLUORIDE ION
5
1
guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate)guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303