6US5: DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template, 3'-amino primer, dGpNHpp analog, and Mn2+

PDB ID: 6US5Download
MMDB ID: 185431
PDB Deposition Date: 2019/10/24
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.25  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6US5: trimeric; determined by author and by software (PISA)
Molecular Components in 6US5
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase I
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*gp*cp*gp*ap*tp*cp*ap*gp*(c42))-3')
Molecule annotation
1
DNA (5'-d(*cp*ap*cp*gp*cp*tp*gp*ap*tp*cp*gp*cp*a)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine
2
1
MANGANESE (II) IONMANGANESE (II) ION
3
5
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303