6TG9: Cryo-EM Structure of NADH reduced form of NAD+-dependent Formate Dehydrogenase from Rhodobacter capsulatus

PDB ID: 6TG9Download
MMDB ID: 186752
PDB Deposition Date: 2019/11/15
Updated in MMDB: 2024/05
Experimental Method:
electron microscopy
Resolution: 3.24  Å
Source Organism:
Similar Structures:
Biological Unit for 6TG9: octameric; determined by author and by software (PISA)
Molecular Components in 6TG9
Label Count Molecule
Proteins (8 molecules)
2
Formate Dehydrogenase Subunit Alpha
Molecule annotation
2
Formate Dehydrogenase Subunit Beta
Molecule annotation
2
Formate Dehydrogenase Subunit Gamma
Molecule annotation
2
Nad-dependent Formate Dehydrogenase Subunit Delta
Molecule annotation
Chemicals and Non-standard biopolymers (26 molecules)
1
4
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
2
2
MOLYBDENUM(VI) IONMOLYBDENUM(VI) ION
3
4
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
4
10
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
5
2
HYDROSULFURIC ACIDHYDROSULFURIC ACID
6
2
FLAVIN MONONUCLEOTIDEFLAVIN MONONUCLEOTIDE
7
2
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303