6TCY: X-ray structure of Danio rerio histone deacetylase 6 (HDAC6) CD2 in complex with a inhibitor SS555

PDB ID: 6TCYDownload
MMDB ID: 195450
PDB Deposition Date: 2019/11/6
Updated in MMDB: 2022/11
Experimental Method:
x-ray diffraction
Resolution: 1.6  Å
Source Organism:
Similar Structures:
Biological Unit for 6TCY: monomeric; determined by author
Molecular Components in 6TCY
Label Count Molecule
Protein (1 molecule)
1
Histone Deacetylase 6
(Gene symbol: hdac6)
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
1
ZINC IONZINC ION
2
2
POTASSIUM IONPOTASSIUM ION
3
1
4-[[[4-(aminomethyl)phenyl]carbamoyl-(4-oxidanylbutyl)amino]methyl]-~{N}-oxidanyl-benzamide4-[[[4-(aminomethyl)phenyl]carbamoyl-(4-oxidanylbutyl)amino]methyl]-~{N}-oxidanyl-benzamide
4
5
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
1
2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
6
1
GLYCEROLGLYCEROL
7
1
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303