6T9L: SAGA DUB module bound to a ubiqitinated nucleosome

PDB ID: 6T9LDownload
MMDB ID: 183574
PDB Deposition Date: 2019/10/28
Updated in MMDB: 2024/05
Experimental Method:
electron microscopy
Resolution: 3.6  Å
Source Organism:
Saccharomyces cerevisiae S288C▼
Similar Structures:
Biological Unit for 6T9L: 15-meric; determined by author and by software (PISA)
Molecular Components in 6T9L
Label Count Molecule
Proteins (13 molecules)
2
Histone H3.2
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2A
Molecule annotation
1
Histone H2B 1.1
Molecule annotation
1
Histone H2B
Molecule annotation
1
Ubiquitin Carboxyl-terminal Hydrolase 8
Molecule annotation
1
Transcription and mRNA Export Factor Sus1
Molecule annotation
1
Saga-associated Factor 11
Molecule annotation
1
Saga-associated Factor 73
Molecule annotation
1
Polyubiquitin-c
Molecule annotation
Nucleotides(2 molecules)
1
Widom601 DNA (145-mer)
Molecule annotation
1
Widom601 DNA (145-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
8
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303